diff --git a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
index e469291eac9..d37b2a67e11 100644
--- a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
+++ b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
@@ -647,7 +647,7 @@ class StockReconciliation(StockController):
 					{"voucher_detail_no": row.name, "actual_qty": ("<", 0), "is_cancelled": 0},
 					"name",
 				)
-				and current_qty
+				and current_qty > 0
 			):
 				new_sle = self.get_sle_for_items(row)
 				new_sle.actual_qty = current_qty * -1