diff --git a/erpnext/accounts/doctype/accounting_dimension/accounting_dimension.py b/erpnext/accounts/doctype/accounting_dimension/accounting_dimension.py
index cdaaa6dd069..02019943c25 100644
--- a/erpnext/accounts/doctype/accounting_dimension/accounting_dimension.py
+++ b/erpnext/accounts/doctype/accounting_dimension/accounting_dimension.py
@@ -309,8 +309,8 @@ def get_dimensions(with_cost_center_and_project=False):
 	if with_cost_center_and_project:
 		dimension_filters.extend(
 			[
-				{"fieldname": "cost_center", "document_type": "Cost Center"},
-				{"fieldname": "project", "document_type": "Project"},
+				frappe._dict({"fieldname": "cost_center", "document_type": "Cost Center"}),
+				frappe._dict({"fieldname": "project", "document_type": "Project"}),
 			]
 		)
 
diff --git a/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.js b/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.js
index 75a86318fbb..74a9f709caa 100644
--- a/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.js
+++ b/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.js
@@ -61,6 +61,22 @@ erpnext.accounts.PaymentReconciliationController = class PaymentReconciliationCo
 				},
 			};
 		});
+		this.frm.set_query("cost_center", "payments", () => {
+			return {
+				filters: {
+					company: this.frm.doc.company,
+					is_group: 0,
+				},
+			};
+		});
+		this.frm.set_query("cost_center", "allocation", () => {
+			return {
+				filters: {
+					company: this.frm.doc.company,
+					is_group: 0,
+				},
+			};
+		});
 	}
 
 	refresh() {
diff --git a/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.py b/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.py
index 1e1a71ea707..2dec2bf8e94 100644
--- a/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.py
+++ b/erpnext/accounts/doctype/payment_reconciliation/payment_reconciliation.py
@@ -72,7 +72,7 @@ class PaymentReconciliation(Document):
 		self.common_filter_conditions = []
 		self.accounting_dimension_filter_conditions = []
 		self.ple_posting_date_filter = []
-		self.dimensions = get_dimensions()[0]
+		self.dimensions = get_dimensions(with_cost_center_and_project=True)[0]
 
 	def load_from_db(self):
 		# 'modified' attribute is required for `run_doc_method` to work properly.