diff --git a/erpnext/controllers/status_updater.py b/erpnext/controllers/status_updater.py
index 9b8ccac90ed..368a3ff8390 100644
--- a/erpnext/controllers/status_updater.py
+++ b/erpnext/controllers/status_updater.py
@@ -383,15 +383,17 @@ class StatusUpdater(Document):
 
 	def fetch_items_with_pending_qty(self, args, item_field, items):
 		doctype = frappe.qb.DocType(args["target_dt"])
-		item_field = doctype[item_field]
+		item_field_col = doctype[item_field]
 		target_ref_field = doctype[args["target_ref_field"]]
 		target_field = doctype[args["target_field"]]
 
-		return (
+		is_qty_check = "qty" in args["target_ref_field"]
+
+		query = (
 			frappe.qb.from_(doctype)
 			.select(
 				doctype.name,
-				item_field.as_("item_code"),
+				item_field_col.as_("item_code"),
 				target_ref_field,
 				target_field,
 				doctype.parenttype,
@@ -400,9 +402,18 @@ class StatusUpdater(Document):
 			.where(target_ref_field < target_field)
 			.where(doctype.name.isin(items))
 			.where(doctype.docstatus == 1)
-			.run(as_dict=True)
 		)
 
+		if is_qty_check:
+			item_table = frappe.qb.DocType("Item")
+			query = (
+				query.join(item_table)
+				.on(item_table.name == item_field_col)
+				.where(item_table.is_stock_item == 1)
+			)
+
+		return query.run(as_dict=True)
+
 	def check_overflow_with_allowance(self, item, args):
 		"""
 		Checks if there is overflow considering a relaxation allowance.