diff --git a/erpnext/controllers/buying_controller.py b/erpnext/controllers/buying_controller.py
index 267b0ed5dd5..3fdf92e7990 100644
--- a/erpnext/controllers/buying_controller.py
+++ b/erpnext/controllers/buying_controller.py
@@ -98,7 +98,29 @@ class BuyingController(SubcontractingController):
 						item.from_warehouse,
 						type_of_transaction="Outward",
 						do_not_submit=True,
+						qty=item.qty,
 					)
+				elif (
+					not self.is_new()
+					and item.serial_and_batch_bundle
+					and next(
+						(
+							old_item
+							for old_item in self.get_doc_before_save().items
+							if old_item.name == item.name and old_item.qty != item.qty
+						),
+						None,
+					)
+					and len(
+						sabe := frappe.get_all(
+							"Serial and Batch Entry",
+							filters={"parent": item.serial_and_batch_bundle, "serial_no": ["is", "not set"]},
+							pluck="name",
+						)
+					)
+					== 1
+				):
+					frappe.set_value("Serial and Batch Entry", sabe[0], "qty", item.qty)
 
 	def set_rate_for_standalone_debit_note(self):
 		if self.get("is_return") and self.get("update_stock") and not self.return_against:
diff --git a/erpnext/controllers/stock_controller.py b/erpnext/controllers/stock_controller.py
index eb33187033d..80f860b4553 100644
--- a/erpnext/controllers/stock_controller.py
+++ b/erpnext/controllers/stock_controller.py
@@ -811,7 +811,7 @@ class StockController(AccountsController):
 					)
 
 	def make_package_for_transfer(
-		self, serial_and_batch_bundle, warehouse, type_of_transaction=None, do_not_submit=None
+		self, serial_and_batch_bundle, warehouse, type_of_transaction=None, do_not_submit=None, qty=0
 	):
 		return make_bundle_for_material_transfer(
 			is_new=self.is_new(),
@@ -822,6 +822,7 @@ class StockController(AccountsController):
 			warehouse=warehouse,
 			type_of_transaction=type_of_transaction,
 			do_not_submit=do_not_submit,
+			qty=qty,
 		)
 
 	def get_sl_entries(self, d, args):
@@ -1815,15 +1816,20 @@ def make_bundle_for_material_transfer(**kwargs):
 		kwargs.type_of_transaction = "Inward"
 
 	bundle_doc = frappe.copy_doc(bundle_doc)
+	bundle_doc.docstatus = 0
 	bundle_doc.warehouse = kwargs.warehouse
 	bundle_doc.type_of_transaction = kwargs.type_of_transaction
 	bundle_doc.voucher_type = kwargs.voucher_type
 	bundle_doc.voucher_no = "" if kwargs.is_new or kwargs.docstatus == 2 else kwargs.voucher_no
 	bundle_doc.is_cancelled = 0
 
+	qty = 0
+	if len(bundle_doc.entries) == 1 and kwargs.qty < bundle_doc.total_qty and not bundle_doc.has_serial_no:
+		qty = kwargs.qty
+
 	for row in bundle_doc.entries:
 		row.is_outward = 0
-		row.qty = abs(row.qty)
+		row.qty = abs(qty or row.qty)
 		row.stock_value_difference = abs(row.stock_value_difference)
 		if kwargs.type_of_transaction == "Outward":
 			row.qty *= -1
diff --git a/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py b/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
index 8e8532a904b..984f313b848 100644
--- a/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
+++ b/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
@@ -7,6 +7,8 @@ from frappe.utils import add_days, cint, cstr, flt, get_datetime, getdate, nowti
 from pypika import functions as fn
 
 import erpnext
+import erpnext.controllers
+import erpnext.controllers.status_updater
 from erpnext.accounts.doctype.account.test_account import get_inventory_account
 from erpnext.buying.doctype.supplier.test_supplier import create_supplier
 from erpnext.controllers.buying_controller import QtyMismatchError
@@ -4129,6 +4131,59 @@ class TestPurchaseReceipt(FrappeTestCase):
 
 		self.assertTrue(sles)
 
+	def test_internal_pr_qty_change_only_single_batch(self):
+		from erpnext.stock.doctype.delivery_note.delivery_note import make_inter_company_purchase_receipt
+		from erpnext.stock.doctype.delivery_note.test_delivery_note import create_delivery_note
+
+		prepare_data_for_internal_transfer()
+
+		def get_sabb_qty(sabb):
+			return frappe.get_value("Serial and Batch Bundle", sabb, "total_qty")
+
+		item = make_item("Item with only Batch", {"has_batch_no": 1})
+		item.create_new_batch = 1
+		item.save()
+
+		make_purchase_receipt(
+			item_code=item.item_code,
+			qty=10,
+			rate=100,
+			company="_Test Company with perpetual inventory",
+			warehouse="Stores - TCP1",
+		)
+
+		dn = create_delivery_note(
+			item_code=item.item_code,
+			qty=10,
+			rate=100,
+			company="_Test Company with perpetual inventory",
+			customer="_Test Internal Customer 2",
+			cost_center="Main - TCP1",
+			warehouse="Stores - TCP1",
+			target_warehouse="Work In Progress - TCP1",
+		)
+		pr = make_inter_company_purchase_receipt(dn.name)
+
+		pr.items[0].warehouse = "Stores - TCP1"
+		pr.items[0].qty = 8
+		pr.save()
+
+		# Test 1 - Check if SABB qty is changed on first save
+		self.assertEqual(abs(get_sabb_qty(pr.items[0].serial_and_batch_bundle)), 8)
+
+		pr.items[0].qty = 6
+		pr.items[0].received_qty = 6
+		pr.save()
+
+		# Test 2 - Check if SABB qty is changed when saved again
+		self.assertEqual(abs(get_sabb_qty(pr.items[0].serial_and_batch_bundle)), 6)
+
+		pr.items[0].qty = 12
+		pr.items[0].received_qty = 12
+
+		# Test 3 - OverAllowanceError should be thrown as qty is greater than qty in DN
+		self.assertRaises(erpnext.controllers.status_updater.OverAllowanceError, pr.submit)
+
 
 def prepare_data_for_internal_transfer():
 	from erpnext.accounts.doctype.sales_invoice.test_sales_invoice import create_internal_supplier