diff --git a/erpnext/setup/doctype/company/delete_company_transactions.py b/erpnext/setup/doctype/company/delete_company_transactions.py
index 87c13754bf4..f7334b1e6d1 100644
--- a/erpnext/setup/doctype/company/delete_company_transactions.py
+++ b/erpnext/setup/doctype/company/delete_company_transactions.py
@@ -6,6 +6,7 @@ import frappe
 
 from frappe.utils import cint
 from frappe import _
+from frappe.desk.notifications import clear_notifications
 
 @frappe.whitelist()
 def delete_company_transactions(company_name):
@@ -16,11 +17,16 @@ def delete_company_transactions(company_name):
 		frappe.throw(_("Transactions can only be deleted by the creator of the Company"), frappe.PermissionError)
 
 	delete_bins(company_name)
+	
+	delete_time_logs(company_name)
 
 	for doctype in frappe.db.sql_list("""select parent from
 		tabDocField where fieldtype='Link' and options='Company'"""):
-		if doctype not in ("Account", "Cost Center", "Warehouse", "Budget Detail", "Party Account"):
+		if doctype not in ("Account", "Cost Center", "Warehouse", "Budget Detail", "Party Account", "Employee"):
 			delete_for_doctype(doctype, company_name)
+			
+	# Clear notification counts
+	clear_notifications()
 
 def delete_for_doctype(doctype, company_name):
 	meta = frappe.get_meta(doctype)
@@ -60,3 +66,20 @@ def delete_for_doctype(doctype, company_name):
 def delete_bins(company_name):
 	frappe.db.sql("""delete from tabBin where warehouse in
 			(select name from tabWarehouse where company=%s)""", company_name)
+
+def delete_time_logs(company_name):
+	# Delete Time Logs as it is linked to Production Order / Project / Task, which are linked to company
+	frappe.db.sql("""
+		delete from `tabTime Log`
+		where 
+			(ifnull(project, '') != '' 
+				and exists(select name from `tabProject` where name=`tabTime Log`.project and company=%(company)s))
+			or (ifnull(task, '') != '' 
+				and exists(select name from `tabTask` where name=`tabTime Log`.task and company=%(company)s))
+			or (ifnull(production_order, '') != '' 
+				and exists(select name from `tabProduction Order` 
+					where name=`tabTime Log`.production_order and company=%(company)s))
+			or (ifnull(sales_invoice, '') != '' 
+				and exists(select name from `tabSales Invoice` 
+					where name=`tabTime Log`.sales_invoice and company=%(company)s))
+	""", {"company": company_name})
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